Daniel Doerr, Jun.-Prof. Dr. rer. nat.
Principal Investigator
daniel.doerr
hhu.de
Daniel Doerr is an assistant professor at Heinrich Heine University and heads the Paul Langerhans Group "Computational Diabetology" at the German Diabetes Center (DDZ). Daniel received his PhD from Bielefeld University in 2015. His research interest is broad and ranges from algorithmic to applied bioinformatics, in particular comparative genomics, pangenomics, functional genomics, and multimodal omics analysis. Daniel is associate member of the Human Pangenome Reference Consortium and regular member of programm committees for the bioinformatics conferences WABI and RECOMB-CG. Daniel is an editorial board member of the Journal of Computational Biology (Mary Ann Liebert).
panacus
A tool for computing statistics for GFA-formatted pangenome graphs
GFAffix
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
Training an automated circulating tumor cell classifier when the true
PNAS nexus, February 9, 2025
Nanou A, Stoecklein NH, Doerr D, Driemel C, Terstappen LWMM, Coumans FAW
Panacus: fast and exact pangenome growth and core size estimation
Bioinformatics, November 9, 2024
Parmigiani L, Garrison E, Stoye J, Marschall T, Doerr D
Reconstructing rearrangement phylogenies of natural genomes
Proc of WABI'24, August 26, 2024
Bohnenkämper L, Stoye J, Doerr D
AGO, a framework for the reconstruction of ancestral syntenies and gene
Methods Mol Biol, June 1, 2024
Cribbie EP, Doerr D, Chauve C
Family-Free Genome Comparison
Methods Mol Biol, June 1, 2024
Braga MDV, Doerr D, Rubert DP, Stoye J
A Draft Human Pangenome Reference
Nature, May 10, 2023
Liao W*, Asri M*, Ebler J*, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, Eizenga JM, Feng X, Fischer C, Fulton RS, Garg S, Groza C, Guarracino A, Harvey WT, Heumos S, Howe K, Jain M, Lu T, Markello C, Martin FJ, Mitchell MW, Munson KM, Mwaniki MN, Novak AM, Olsen HE, Pesout T, Porubsky D, Prins P, Sibbesen JA, Tomlinson C, Villani F, Vollger MR, Human Pangenome Reference Consortium, Bourque G, Chaisson MJ, Flicek P, Phillippy AM, Zook JM, Eichler EE, Haussler D, Jarvis ED, Miga KH, Wang T, Garrison E†, Marschall T†, Hall I†, Li H†, Paten B†
Legend: * joint first author; † joint last author
